CHG-2020-05-04 yum update

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Status

2020-05-04 11:37 UTC

Validation complete. CHG successful.

2020-05-04 11:02 UTC

Reboot finished with new kernel and all packages upgraded. Web server is working (this update confirms that). Continuing with other validation steps.

2020-05-04 10:45 UTC

Starting CHG

2020-05-03 09:18 UTC

Rescheduling this CHG 3.5 hours later so it begins just after the daily backups finish uploading to B2.

2020-04-28 15:35 UTC

Finished CHG process on staging. Validation looks good.

2020-04-27 12:47 UTC

Creating first draft of this change ticket

Change Info

Scheduled Time

This change will take place on 2020-05-04 10:30 UTC

= 2020-05-04 16:15 Kathmandu = 2020-05-04 05:30 Kansas City

https://www.timeanddate.com/worldclock/converter.html?iso=20200504T103000&p1=1440&p2=117&p3=405

Points of Contact

Change being performed by: Michael Altfield

Service owners: Catarina Mota & Marcin Jakubowski

Purpose

This CHG will update all the yum-installed packages on the server.

The last system-wide `yum update` appears to have been preformed on 2018-09-22, so we're well over-due for an update.

Note that security-critical updates are already being updated automatically via `yum-cron`.

Time Length

This whole process is expected to take 1-3 hours

Systems Impacted

The production server will be restarted after the update to apply kernel changes, and this will necessarily bring all of OSE's sites offline temporarily.

Staging Test

Finished. See the following log for more info:

Pre-state Proof

The below command will output a ton of packages requiring updates before this CHG 

yum list updates

Change Steps

# open screen
screen -S CHG-2020-05-04_yum_update

# become root
sudo su -

# confirm that backups have finished uploading to B2
less /var/log/backups/backup.log
sudo -u b2user /home/b2user/virtualenv/bin/b2 ls ose-server-backups | grep `date "+%Y%m%d"`
date -u
sudo -u b2user /home/b2user/virtualenv/bin/b2 ls ose-server-backups

# create dir for logging the change
tmpDir="/var/tmp/CHG-2020-05-04_yum_update"
mkdir -p $tmpDir

# begin to gracefully shutdown nginx in the background
time nice /sbin/nginx -s quit

# first record the set of packages currently installed
time nice rpm -qa &> "${tmpDir}/before.log"

# install yum-utils
time nice yum -y install yum-utils-1.1.31-53.el7 &> "${tmpDir}/yum-utils.log"

# update packages
time nice yum -y update-to GeoIP-1.5.0-14.el7 acl-2.2.51-15.el7 acpid-2.0.19-9.el7 alsa-lib-1.1.8-1.el7 apr-1.4.8-5.el7 audit-2.8.5-4.el7 audit-libs-2.8.5-4.el7 audit-libs-python-2.8.5-4.el7 augeas-libs-1.4.0-9.el7_7.1 awstats-7.7-1.el7 bash-4.2.46-34.el7 bind-libs-9.11.4-16.P2.el7_8.2 bind-libs-lite-9.11.4-16.P2.el7_8.2 bind-license-9.11.4-16.P2.el7_8.2 bind-utils-9.11.4-16.P2.el7_8.2 binutils-2.27-43.base.el7 biosdevname-0.7.3-2.el7 ca-certificates-2019.2.32-76.el7_7 cairo-1.15.12-4.el7 centos-release-7-8.2003.0.el7.centos certbot-1.3.0-1.el7 checkpolicy-2.5-8.el7 chrony-3.4-1.el7 copy-jdk-configs-3.3-10.el7_5 coreutils-8.22-24.el7 cpio-2.11-27.el7 cpp-4.8.5-39.el7 cronie-1.4.11-23.el7 cronie-anacron-1.4.11-23.el7 cryptsetup-libs-2.0.3-6.el7 curl-7.29.0-57.el7 cyrus-sasl-lib-2.1.26-23.el7 dbus-1.10.24-13.el7_6 dbus-libs-1.10.24-13.el7_6 device-mapper-1.02.164-7.el7_8.1 device-mapper-event-1.02.164-7.el7_8.1 device-mapper-event-libs-1.02.164-7.el7_8.1 device-mapper-libs-1.02.164-7.el7_8.1 device-mapper-persistent-data-0.8.5-2.el7 dhclient-4.2.5-79.el7.centos dhcp-common-4.2.5-79.el7.centos dhcp-libs-4.2.5-79.el7.centos dialog-1.2-5.20130523.el7 diffutils-3.3-5.el7 dmidecode-3.2-3.el7 dracut-033-568.el7 dracut-network-033-568.el7 e2fsprogs-1.42.9-17.el7 e2fsprogs-libs-1.42.9-17.el7 ebtables-2.0.10-16.el7 elfutils-default-yama-scope-0.176-4.el7 elfutils-libelf-0.176-4.el7 elfutils-libs-0.176-4.el7 epel-release-7-12 ethtool-4.8-10.el7 expat-2.1.0-11.el7 file-5.11-36.el7 file-libs-5.11-36.el7 filesystem-3.2-25.el7 findutils-4.5.11-6.el7 firewalld-filesystem-0.6.3-8.el7_8.1 fontconfig-2.13.0-4.3.el7 freetype-2.8-14.el7 gcc-4.8.5-39.el7 gcc-c++-4.8.5-39.el7 gdisk-0.8.10-3.el7 gdk-pixbuf2-2.36.12-3.el7 gettext-0.19.8.1-3.el7 gettext-libs-0.19.8.1-3.el7 git-1.8.3.1-21.el7_7 glib2-2.56.1-5.el7 glibc-2.17-307.el7.1 glibc-common-2.17-307.el7.1 glibc-devel-2.17-307.el7.1 glibc-headers-2.17-307.el7.1 gnupg2-2.0.22-5.el7_5 gnutls-3.3.29-9.el7_6 gobject-introspection-1.56.1-1.el7 gperftools-libs-2.6.1-1.el7 gpm-libs-1.20.7-6.el7 grub2-2.02-0.81.el7.centos grub2-common-2.02-0.81.el7.centos grub2-pc-2.02-0.81.el7.centos grub2-pc-modules-2.02-0.81.el7.centos grub2-tools-2.02-0.81.el7.centos grub2-tools-extra-2.02-0.81.el7.centos grub2-tools-minimal-2.02-0.81.el7.centos grubby-8.28-26.el7 gzip-1.5-10.el7 harfbuzz-1.7.5-2.el7 hostname-3.13-3.el7_7.1 httpd-2.4.6-93.el7.centos httpd-tools-2.4.6-93.el7.centos hwdata-0.252-9.5.el7 info-5.1-5.el7 initscripts-9.49.49-1.el7 iproute-4.11.0-25.el7_7.2 iprutils-2.4.17.1-3.el7_7 ipset-7.1-1.el7 ipset-libs-7.1-1.el7 iptables-1.4.21-34.el7 iptables-services-1.4.21-34.el7 irqbalance-1.0.7-12.el7 jasper-libs-1.900.1-33.el7 java-1.8.0-openjdk-1.8.0.242.b08-1.el7 java-1.8.0-openjdk-headless-1.8.0.242.b08-1.el7 kbd-1.15.5-15.el7 kbd-legacy-1.15.5-15.el7 kbd-misc-1.15.5-15.el7 kernel-3.10.0-1127.el7 kernel-devel-3.10.0-1127.el7 kernel-headers-3.10.0-1127.el7 kernel-tools-3.10.0-1127.el7 kernel-tools-libs-3.10.0-1127.el7 kexec-tools-2.0.15-43.el7 kmod-20-28.el7 kmod-libs-20-28.el7 kpartx-0.4.9-131.el7 krb5-libs-1.15.1-46.el7 libX11-1.6.7-2.el7 libX11-common-1.6.7-2.el7 libXfont-1.5.4-1.el7 libacl-2.2.51-15.el7 libattr-2.4.46-13.el7 libblkid-2.23.2-63.el7 libcap-2.22-11.el7 libcgroup-0.41-21.el7 libcom_err-1.42.9-17.el7 libcroco-0.6.12-4.el7 libcurl-7.29.0-57.el7 libdb-5.3.21-25.el7 libdb-utils-5.3.21-25.el7 libdrm-2.4.97-2.el7 libfastjson-0.99.4-3.el7 libffi-3.0.13-19.el7 libgcc-4.8.5-39.el7 libgomp-4.8.5-39.el7 libicu-50.2-4.el7_7 libjpeg-turbo-1.2.90-8.el7 libmount-2.23.2-63.el7 libpcap-1.5.3-12.el7 libpciaccess-0.14-1.el7 libproxy-0.4.11-11.el7 libpwquality-1.2.3-5.el7 libreport-filesystem-2.1.11-53.el7.centos librsvg2-2.40.20-1.el7 librsync-2.0.2-1.el7 libseccomp-2.3.1-4.el7 libselinux-2.5-15.el7 libselinux-python-2.5-15.el7 libselinux-utils-2.5-15.el7 libsemanage-2.5-14.el7 libsemanage-python-2.5-14.el7 libsepol-2.5-10.el7 libsodium-1.0.18-1.el7 libss-1.42.9-17.el7 libssh2-1.8.0-3.el7 libstdc++-4.8.5-39.el7 libstdc++-devel-4.8.5-39.el7 libtiff-4.0.3-32.el7 libuser-0.60-9.el7 libuuid-2.23.2-63.el7 libxcb-1.13-1.el7 libxml2-2.9.1-6.el7.4 linux-firmware-20191203-76.gite8a0f4c.el7 lm_sensors-libs-3.4.0-8.20160601gitf9185e5.el7 logrotate-3.8.6-19.el7 logwatch-7.4.0-35.20130522svn140.el7_5 lsof-4.87-6.el7 lvm2-2.02.186-7.el7_8.1 lvm2-libs-2.02.186-7.el7_8.1 mailx-12.5-19.el7 make-3.82-24.el7 man-db-2.6.3-11.el7 mariadb-5.5.65-1.el7 mariadb-libs-5.5.65-1.el7 mariadb-server-5.5.65-1.el7 mdadm-4.1-4.el7 mesa-libEGL-18.3.4-7.el7 mesa-libGL-18.3.4-7.el7 mesa-libgbm-18.3.4-7.el7 mesa-libglapi-18.3.4-7.el7 mod_security-2.9.2-1.el7 mod_ssl-2.4.6-93.el7.centos mozjs17-17.0.0-20.el7 munin-2.0.54-1.el7 munin-common-2.0.54-1.el7 munin-node-2.0.54-1.el7 mutt-1.5.21-29.el7 neon-0.30.0-4.el7 net-snmp-5.7.2-48.el7_8 net-snmp-agent-libs-5.7.2-48.el7_8 net-snmp-libs-5.7.2-48.el7_8 net-snmp-utils-5.7.2-48.el7_8 nmap-6.40-19.el7 nmap-ncat-6.40-19.el7 nspr-4.21.0-1.el7 nss-3.44.0-7.el7_7 nss-pem-1.0.3-7.el7 nss-softokn-3.44.0-8.el7_7 nss-softokn-freebl-3.44.0-8.el7_7 nss-sysinit-3.44.0-7.el7_7 nss-tools-3.44.0-7.el7_7 nss-util-3.44.0-4.el7_7 ntp-4.2.6p5-29.el7.centos ntpdate-4.2.6p5-29.el7.centos numactl-libs-2.0.12-5.el7 openldap-2.4.44-21.el7_6 openssh-7.4p1-21.el7 openssh-clients-7.4p1-21.el7 openssh-server-7.4p1-21.el7 openssl-1.0.2k-19.el7 openssl-libs-1.0.2k-19.el7 openvpn-2.4.8-1.el7 pam-1.1.8-23.el7 pango-1.42.4-4.el7_7 parted-3.1-32.el7 passwd-0.79-6.el7 pciutils-libs-3.5.1-3.el7 perl-5.16.3-295.el7 perl-DBD-MySQL-4.023-6.el7 perl-DateTime-TimeZone-1.70-2.el7 perl-Getopt-Long-2.40-3.el7 perl-Git-1.8.3.1-21.el7_7 perl-HTTP-Daemon-6.01-8.el7 perl-IO-Socket-IP-0.21-5.el7 perl-IO-Socket-SSL-1.94-7.el7 perl-Net-CIDR-0.20-1.el7 perl-Pod-Escapes-1.04-295.el7 perl-Socket-2.010-5.el7 perl-libs-5.16.3-295.el7 perl-macros-5.16.3-295.el7 perl-version-0.99.07-6.el7 php-PsrLog-1.1.3-1.el7 php-fedora-autoloader-1.0.1-2.el7 php-seld-phar-utils-1.1.0-1.el7 php56w-5.6.40-1.w7 php56w-cli-5.6.40-1.w7 php56w-common-5.6.40-1.w7 php56w-enchant-5.6.40-1.w7 php56w-gd-5.6.40-1.w7 php56w-imap-5.6.40-1.w7 php56w-intl-5.6.40-1.w7 php56w-ldap-5.6.40-1.w7 php56w-mbstring-5.6.40-1.w7 php56w-mysql-5.6.40-1.w7 php56w-pdo-5.6.40-1.w7 php56w-process-5.6.40-1.w7 php56w-snmp-5.6.40-1.w7 php56w-xml-5.6.40-1.w7 plymouth-0.8.9-0.33.20140113.el7.centos plymouth-core-libs-0.8.9-0.33.20140113.el7.centos plymouth-scripts-0.8.9-0.33.20140113.el7.centos policycoreutils-2.5-34.el7 policycoreutils-python-2.5-34.el7 polkit-0.112-26.el7 postfix-2.10.1-9.el7 postgresql-libs-9.2.24-2.el7_7 procmail-3.22-36.el7_4.1 procps-ng-3.3.10-27.el7 pyOpenSSL-0.13.1-4.el7 python-2.7.5-88.el7 python-chardet-2.2.1-3.el7 python-devel-2.7.5-88.el7 python-gobject-base-3.22.0-1.el7_4.1 python-libs-2.7.5-88.el7 python-linux-procfs-0.4.11-4.el7 python-perf-3.10.0-1127.el7 python-requests-2.6.0-9.el7_8 python-slip-0.4.0-4.el7 python-urlgrabber-3.10-10.el7 python-urllib3-1.10.2-7.el7 python-virtualenv-15.1.0-4.el7_7 python-zope-component-4.1.0-5.el7 python2-acme-1.3.0-1.el7 python2-cached_property-1.5.1-2.el7 python2-certbot-1.3.0-1.el7 python2-docopt-0.6.2-8.el7 python2-future-0.18.2-2.el7 python2-iso8601-0.1.11-8.el7 python2-josepy-1.3.0-2.el7 python2-jsonschema-2.5.1-4.el7 python2-keyring-5.0-4.el7 python2-mock-1.0.1-10.el7 python2-parsedatetime-2.4-6.el7 python2-psutil-5.6.7-1.el7 python2-texttable-1.6.2-1.el7 readline-6.2-11.el7 redhat-rpm-config-9.1.0-88.el7.centos rpm-4.11.3-43.el7 rpm-build-libs-4.11.3-43.el7 rpm-libs-4.11.3-43.el7 rpm-python-4.11.3-43.el7 rsync-3.1.2-10.el7 rsyslog-8.24.0-52.el7 screen-4.1.0-0.25.20120314git3c2946.el7 sed-4.2.2-6.el7 selinux-policy-3.13.1-266.el7 selinux-policy-targeted-3.13.1-266.el7 setools-libs-3.3.8-4.el7 setup-2.8.71-11.el7 shadow-utils-4.6-5.el7 shared-mime-info-1.8-5.el7 sqlite-3.7.17-8.el7_7.1 subversion-1.7.14-14.el7 subversion-libs-1.7.14-14.el7 sudo-1.8.23-9.el7 sysstat-10.1.5-19.el7 systemd-219-73.el7_8.5 systemd-libs-219-73.el7_8.5 systemd-sysv-219-73.el7_8.5 tar-1.26-35.el7 tcpdump-4.9.2-4.el7_7.1 telnet-0.17-65.el7_8 tuned-2.11.0-8.el7 tzdata-2019c-1.el7 tzdata-java-2019c-1.el7 unzip-6.0-21.el7 util-linux-2.23.2-63.el7 vim-common-7.4.629-6.el7 vim-enhanced-7.4.629-6.el7 vim-filesystem-7.4.629-6.el7 vim-minimal-7.4.629-6.el7 virt-what-1.18-4.el7 webmin-1.941-1 wget-1.14-18.el7_6.1 xfsprogs-4.5.0-20.el7 xorg-x11-font-utils-7.5-21.el7 yum-3.4.3-167.el7.centos yum-cron-3.4.3-167.el7.centos yum-plugin-fastestmirror-1.1.31-53.el7 zlib-1.2.7-18.el7 &> "${tmpDir}/update.log"

# disable some new httpd config files that will break apache otherwise
mv /etc/httpd/conf.d/autoindex.conf /etc/httpd/conf.d/autoindex.conf.`date "+%Y%m%d_%H%M%S"`.disabled
mv /etc/httpd/conf.d/awstats.conf /etc/httpd/conf.d/awstats.conf.`date "+%Y%m%d_%H%M%S"`.disabled
mv /etc/httpd/conf.d/ssl.conf /etc/httpd/conf.d/ssl.conf.`date "+%Y%m%d_%H%M%S"`.disabled
mv /etc/httpd/conf.d/userdir.conf /etc/httpd/conf.d/userdir.conf.`date "+%Y%m%d_%H%M%S"`.disabled
mv /etc/httpd/conf.d/welcome.conf /etc/httpd/conf.d/welcome.conf.`date "+%Y%m%d_%H%M%S"`.disabled

# log the post-state packages and versions
time nice rpm -qa &> "${tmpDir}/after.log"

# check to see what changes require a reboot, if any
time nice needs-restarting &> "${tmpDir}/needs-restarting.log"
time nice needs-restarting -r &> "${tmpDir}/needs-reboot.log"

# reboot the system to apply kernel changes
reboot

# after reboot, initiate a new backup
time sudo /bin/nice /root/backups/backup.sh &>> /var/log/backups/backup.log

Post-state Proof

The below command will output zero or nearly-zero packages after this CHG is successfully complete 

yum list updates

Validation Steps

  1. Access the following URLs; make sure redirects and the destination pages look sane
    1. http://wiki.opensourceecology.org/
    2. http://opensourceecology.org/
    3. http://openbuildinginstitute.org/
    4. http://store.opensourceecology.org/
    5. http://oswh.opensourceecology.org/
    6. http://fef.opensourceecology.org/
    7. http://microfactory.opensourceecology.org/
    8. http://forum.opensourceecology.org/
    9. http://phplist.opensourceecology.org/lists/
  1. Access and login to the following private sites too to make sure everything is sane
    1. https://awstats.opensourceecology.org:4443
    2. https://munin.opensourceecology.org:4443
  1. Login and attempt to make a trivial change on the following sites
    1. https://wiki.opensourceecology.org/
    2. https://opensourceecology.org/

Revert Steps

All the packages can be reverted to their previous versions using the following command 

yum update-to firewalld-filesystem-0.4.4.4-6.el7.noarch kernel-headers-3.10.0-693.2.2.el7.x86_64 libevent-2.0.21-4.el7.x86_64 perl-Carp-1.26-244.el7.noarch ncurses-base-5.9-14.20130511.el7_4.noarch perl-File-Temp-0.23.01-3.el7.noarch perl-Encode-Locale-1.03-5.el7.noarch glibc-2.17-196.el7.x86_64 perl-Filter-1.49-3.el7.x86_64 python-cffi-1.6.0-5.el7.x86_64 sysvinit-tools-2.88-14.dsf.el7.x86_64 perl-Switch-2.16-7.el7.noarch libselinux-2.5-11.el7.x86_64 acl-2.2.51-12.el7.x86_64 perl-FCGI-0.74-8.el7.x86_64 libcap-2.22-9.el7.x86_64 ustr-1.0.4-16.el7.x86_64 perl-Business-ISBN-Data-20120719.001-2.el7.noarch libblkid-2.23.2-43.el7.x86_64 perl-Geo-IP-1.43-3.el7.x86_64 gmp-6.0.0-15.el7.x86_64 perl-HTTP-Cookies-6.01-5.el7.noarch libX11-1.6.5-1.el7.x86_64 php-paragonie-random-compat-2.0.18-1.el7.noarch perl-IO-Socket-SSL-1.94-6.el7.noarch shared-mime-info-1.8-3.el7.x86_64 pkcs11-helper-1.11-3.el7.x86_64 nss-pem-1.0.3-4.el7.x86_64 perl-Mozilla-CA-20130114-5.el7.noarch varnish-libs-4.0.5-1.el7.x86_64 readline-6.2-10.el7.x86_64 nginx-filesystem-1.16.1-1.el7.noarch libXi-1.7.9-1.el7.x86_64 nginx-mod-http-xslt-filter-1.16.1-1.el7.x86_64 gd-2.0.35-26.el7.x86_64 mesa-libglapi-17.0.1-6.20170307.el7.x86_64 sudo-1.8.23-4.el7.x86_64 apr-1.4.8-3.el7.x86_64 iptables-1.4.21-18.0.1.el7.centos.x86_64 liboath-2.6.2-1.el7.x86_64 ca-certificates-2017.2.14-71.el7.noarch perl-Clipboard-0.21-1.el7.1.noarch gpm-libs-1.20.7-5.el7.x86_64 ethtool-4.8-1.el7.x86_64 sqlite-3.7.17-8.el7.x86_64 pytz-2016.10-2.el7.noarch ntpdate-4.2.6p5-25.el7.centos.2.x86_64 cacti-1.2.11-1.el7.noarch perl-Data-Dumper-2.145-3.el7.x86_64 keyutils-libs-1.5.8-3.el7.x86_64 perl-IO-Compress-2.061-2.el7.noarch bind-libs-lite-9.9.4-51.el7.x86_64 perl-DBD-MySQL-4.023-5.el7.x86_64 php-symfony-process-2.8.12-2.el7.noarch fipscheck-1.4.1-6.el7.x86_64 libnetfilter_conntrack-1.0.6-1.el7_3.x86_64 nmap-6.40-7.el7.x86_64 json-c-0.11-4.el7_0.x86_64 php-symfony-config-2.8.12-2.el7.noarch 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kernel-devel-3.10.0-693.2.2.el7.x86_64 perl-Text-ParseWords-3.29-4.el7.noarch grub2-common-2.02-0.64.el7.centos.noarch telnet-0.17-64.el7.x86_64 certbot-0.26.1-2.el7.noarch libX11-common-1.6.5-1.el7.noarch

See Also

  1. https://serverfault.com/questions/1014455/how-to-list-packages-needing-update-in-format-for-yum-update-to
  2. List of other CHG "tickets"
Retrieved from "https://wiki.opensourceecology.org/index.php?title=CHG-2020-05-04_yum_update&oldid=219495"