CHG-2024-07-26 yum update

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Status

2024-07-26 18:50 UTC

Finished validation steps.

This change was successful.

2024-07-26 18:22 UTC

Finished adding updates to this CHG "ticket" article on the wiki. Continuing with post-change validation steps.

The Wiki is somehow giving me spinning-circles that make it extremely annoying & slow to edit the wiki -- not sure if the issue is my firefox or the mediawiki server.

I launched a new VM that only has 1 program running = firefox. Firefox has only 1 tab open = the edit page for this wiki article (https://wiki.opensourceecology.org/index.php?title=CHG-2024-07-26_yum_update&action=edit). I'm still experiencing freezing on the edit page, and the CPU of the VM is running high at 20-60%, with me just trying to edit the text in the textarea. Something is definitely wrong here, but it's still not clear if it's caused by the server or my client.

2024-07-26 18:02 UTC

I'm able to enter this edit into the wiki right now

2024-07-26 17:59:26 UTC

Apache is started successfully after deleting 4x apache files: 

/etc/httpd/conf.d/autoindex.conf
/etc/httpd/conf.d/ssl.conf
/etc/httpd/conf.d/userdir.conf
/etc/httpd/conf.d/welcome.conf

2024-07-26 17:16:49 UTC

I initiated a post-update backup.

2024-07-26 17:09 UTC

Server reboot after updates.

Apache failed to start 

[root@opensourceecology ~]# journalctl -u httpd --no-pager
-- Logs begin at Fri 2024-07-26 17:09:34 UTC, end at Fri 2024-07-26 17:15:26 UTC. --
Jul 26 17:09:47 opensourceecology.org systemd[1]: Starting The Apache HTTP Server...
Jul 26 17:09:47 opensourceecology.org httpd[1094]: (98)Address already in use: AH00072: make_sock: could not bind to address [::]:443
Jul 26 17:09:47 opensourceecology.org httpd[1094]: (98)Address already in use: AH00072: make_sock: could not bind to address 0.0.0.0:443
Jul 26 17:09:47 opensourceecology.org httpd[1094]: no listening sockets available, shutting down
Jul 26 17:09:47 opensourceecology.org httpd[1094]: AH00015: Unable to open logs
Jul 26 17:09:47 opensourceecology.org systemd[1]: httpd.service: main process exited, code=exited, status=1/FAILURE
Jul 26 17:09:47 opensourceecology.org systemd[1]: Failed to start The Apache HTTP Server.
Jul 26 17:09:47 opensourceecology.org systemd[1]: Unit httpd.service entered failed state.
Jul 26 17:09:47 opensourceecology.org systemd[1]: httpd.service failed.
[root@opensourceecology ~]#

2024-07-26 16:00 UTC

CHG started

2024-07-25 12:52 UTC

After meeting with Marcin, he decided to do the update directly to production (skipping bringing the staging server back online)

2024-07-24 05:30 UTC

Creating first draft of this change ticket

Change Info

Scheduled Time

This change will take place on 2024-07-26 16:00 UTC

= 2024-07-26 11:00 Kansas City, US = 2024-07-26 11:00 Guayaquil, EC

https://www.timeanddate.com/worldclock/converter.html?iso=20240727T160000&p1=405&p2=1440&p3=93

Points of Contact

Change being performed by: Michael Altfield

Service owners: Catarina Mota & Marcin Jakubowski

Purpose

This CHG will update all the yum-installed packages on the server.

The last system-wide `yum update` appears to have been preformed on 2020-05-04, so we're well over-due for an update.

Note that security-critical updates are already being updated automatically via `yum-cron`.

Time Length

This whole process is expected to take 1-3 hours.

Some systems could be impacted for days, if issues are encountered.

Systems Impacted

The production server will be restarted after the update to apply kernel changes, and this will necessarily bring all of OSE's sites offline temporarily.

Staging Test

Marcin requested that we do this update directly on production, since the staging environment is currently not functional, and it might take a few days of work to bring it back online. I informed him of the risks, and he accepted the possibility of a few days of downtime.

Pre-state Proof

The below command will output a ton of packages requiring updates before this CHG 

yum list updates

Change Steps

# open screen
screen -S CHG-2024-07-26_yum_update

# become root
sudo su -

# confirm that backups have finished uploading to B2
less /var/log/backups/backup.log
sudo -u b2user /home/b2user/virtualenv/bin/b2 ls ose-server-backups | grep `date "+%Y%m%d"`
date -u
sudo -u b2user /home/b2user/virtualenv/bin/b2 ls ose-server-backups

# create dir for logging the change
tmpDir="/var/tmp/CHG-2024-07-26_yum_update"
mkdir -p $tmpDir

# begin to gracefully shutdown nginx in the background
time nice /sbin/nginx -s quit

# since we're skipping prod; let's be safe(r) and do a backup (while the db is stopped), right before we do the upgrade
systemctl status mariadb
systemctl stop mariadb
systemctl status mariadb
time sudo /bin/nice /root/backups/backup.sh &>> /var/log/backups/backup.log

# first record the set of packages currently installed
time nice rpm -qa &> "${tmpDir}/before.log"

# update packages
time nice yum -y update-to apr-1.4.8-7.el7 apr-util-1.5.2-6.el7_9.1 augeas-libs-1.4.0-10.el7 bash-4.2.46-35.el7_9 bind-export-libs-9.11.4-26.P2.el7_9.16 bind-libs-9.11.4-26.P2.el7_9.16 bind-libs-lite-9.11.4-26.P2.el7_9.16 bind-license-9.11.4-26.P2.el7_9.16 bind-utils-9.11.4-26.P2.el7_9.16 binutils-2.27-44.base.el7_9.1 ca-certificates-2023.2.60_v7.0.306-72.el7_9 centos-release-7-9.2009.2.el7.centos chkconfig-1.7.6-1.el7 copy-jdk-configs-3.3-11.el7_9 coreutils-8.22-24.el7_9.2 cpio-2.11-28.el7 cpp-4.8.5-44.el7 cronie-1.4.11-25.el7_9 cronie-anacron-1.4.11-25.el7_9 cups-libs-1.6.3-52.el7_9 curl-7.29.0-59.el7_9.2 cyrus-sasl-lib-2.1.26-24.el7_9 dbus-1.10.24-15.el7 dbus-libs-1.10.24-15.el7 device-mapper-1.02.170-6.el7_9.5 device-mapper-event-1.02.170-6.el7_9.5 device-mapper-event-libs-1.02.170-6.el7_9.5 device-mapper-libs-1.02.170-6.el7_9.5 device-mapper-persistent-data-0.8.5-3.el7_9.2 dhclient-4.2.5-83.el7.centos.2 dhcp-common-4.2.5-83.el7.centos.2 dhcp-libs-4.2.5-83.el7.centos.2 diffutils-3.3-6.el7_9 dmidecode-3.2-5.el7_9.1 dracut-033-572.el7 dracut-network-033-572.el7 e2fsprogs-1.42.9-19.el7 e2fsprogs-libs-1.42.9-19.el7 elfutils-default-yama-scope-0.176-5.el7 elfutils-libelf-0.176-5.el7 elfutils-libs-0.176-5.el7 expat-2.1.0-15.el7_9 file-5.11-37.el7 file-libs-5.11-37.el7 firewalld-filesystem-0.6.3-13.el7_9 freetype-2.8-14.el7_9.1 gcc-4.8.5-44.el7 gcc-c++-4.8.5-44.el7 gd-2.0.35-27.el7_9 geoipupdate-2.5.0-2.el7 git-1.8.3.1-25.el7_9 glib2-2.56.1-9.el7_9 glibc-2.17-326.el7_9.3 glibc-common-2.17-326.el7_9.3 glibc-devel-2.17-326.el7_9.3 glibc-headers-2.17-326.el7_9.3 grub2-2.02-0.87.0.2.el7.centos.14 grub2-common-2.02-0.87.0.2.el7.centos.14 grub2-pc-2.02-0.87.0.2.el7.centos.14 grub2-pc-modules-2.02-0.87.0.2.el7.centos.14 grub2-tools-2.02-0.87.0.2.el7.centos.14 grub2-tools-extra-2.02-0.87.0.2.el7.centos.14 grub2-tools-minimal-2.02-0.87.0.2.el7.centos.14 gtk-update-icon-cache-3.22.30-8.el7_9 gzip-1.5-11.el7_9 haveged-1.9.13-1.el7 httpd-2.4.6-99.el7.centos.1 httpd-tools-2.4.6-99.el7.centos.1 hunspell-1.3.2-16.el7 hwdata-0.252-9.7.el7 initscripts-9.49.53-1.el7_9.1 iproute-4.11.0-30.el7 iptables-1.4.21-35.el7 iptables-services-1.4.21-35.el7 java-1.8.0-openjdk-1.8.0.412.b08-1.el7_9 java-1.8.0-openjdk-headless-1.8.0.412.b08-1.el7_9 kbd-1.15.5-16.el7_9 kbd-legacy-1.15.5-16.el7_9 kbd-misc-1.15.5-16.el7_9 kernel-3.10.0-1160.119.1.el7 kernel-devel-3.10.0-1160.119.1.el7 kernel-headers-3.10.0-1160.119.1.el7 kernel-tools-3.10.0-1160.119.1.el7 kernel-tools-libs-3.10.0-1160.119.1.el7 kexec-tools-2.0.15-51.el7_9.3 kpartx-0.4.9-136.el7_9 krb5-libs-1.15.1-55.el7_9 less-458-10.el7_9 libX11-1.6.7-5.el7_9 libX11-common-1.6.7-5.el7_9 libXpm-3.5.12-2.el7_9 libblkid-2.23.2-65.el7_9.1 libcom_err-1.42.9-19.el7 libcroco-0.6.12-6.el7_9 libcurl-7.29.0-59.el7_9.2 libgcc-4.8.5-44.el7 libgomp-4.8.5-44.el7 libmount-2.23.2-65.el7_9.1 libpcap-1.5.3-13.el7_9 libpng-1.5.13-8.el7 librsync-2.3.4-1.el7 libsmartcols-2.23.2-65.el7_9.1 libss-1.42.9-19.el7 libssh2-1.8.0-4.el7_9.1 libstdc++-4.8.5-44.el7 libstdc++-devel-4.8.5-44.el7 libtiff-4.0.3-35.el7 libuuid-2.23.2-65.el7_9.1 libxml2-2.9.1-6.el7_9.6 libxml2-python-2.9.1-6.el7_9.6 libxslt-1.1.28-6.el7 linux-firmware-20200421-83.git78c0348.el7_9 lm_sensors-libs-3.4.0-8.20160601gitf9185e5.el7_9.1 lvm2-2.02.187-6.el7_9.5 lvm2-libs-2.02.187-6.el7_9.5 lz4-1.8.3-1.el7 mariadb-5.5.68-1.el7 mariadb-libs-5.5.68-1.el7 mariadb-server-5.5.68-1.el7 mdadm-4.1-9.el7_9 mesa-libEGL-18.3.4-12.el7_9 mesa-libGL-18.3.4-12.el7_9 mesa-libgbm-18.3.4-12.el7_9 mesa-libglapi-18.3.4-12.el7_9 mod_security_crs-2.2.9-3.el7_9 mod_ssl-2.4.6-99.el7.centos.1 munin-2.0.75-1.el7 munin-cgi-2.0.75-1.el7 munin-common-2.0.75-1.el7 munin-nginx-2.0.75-1.el7 munin-node-2.0.75-1.el7 ncdu-1.20-1.el7 net-snmp-5.7.2-49.el7_9.4 net-snmp-agent-libs-5.7.2-49.el7_9.4 net-snmp-libs-5.7.2-49.el7_9.4 net-snmp-utils-5.7.2-49.el7_9.4 nettle-2.7.1-9.el7_9 nspr-4.35.0-1.el7_9 nss-3.90.0-2.el7_9 nss-pem-1.0.3-7.el7_9.1 nss-softokn-3.90.0-6.el7_9 nss-softokn-freebl-3.90.0-6.el7_9 nss-sysinit-3.90.0-2.el7_9 nss-tools-3.90.0-2.el7_9 nss-util-3.90.0-1.el7_9 ntp-4.2.6p5-29.el7.centos.2 ntpdate-4.2.6p5-29.el7.centos.2 openldap-2.4.44-25.el7_9 openssh-7.4p1-23.el7_9 openssh-clients-7.4p1-23.el7_9 openssh-server-7.4p1-23.el7_9 openssl-1.0.2k-26.el7_9 openssl-libs-1.0.2k-26.el7_9 perl-5.16.3-299.el7_9 perl-DBD-Pg-2.19.3-5.el7_9 perl-Git-1.8.3.1-25.el7_9 perl-Net-Server-2.007-3.el7 perl-Pod-Escapes-1.04-299.el7_9 perl-libs-5.16.3-299.el7_9 perl-macros-5.16.3-299.el7_9 plymouth-0.8.9-0.34.20140113.el7.centos plymouth-core-libs-0.8.9-0.34.20140113.el7.centos plymouth-scripts-0.8.9-0.34.20140113.el7.centos polkit-0.112-26.el7_9.1 postgresql-libs-9.2.24-9.el7_9 procps-ng-3.3.10-28.el7 psmisc-22.20-17.el7 python-2.7.5-94.el7_9 python-devel-2.7.5-94.el7_9 python-libs-2.7.5-94.el7_9 python-perf-3.10.0-1160.119.1.el7 python-requests-2.6.0-10.el7 python-rpm-macros-3-34.el7 python-srpm-macros-3-34.el7 python-virtualenv-15.1.0-7.el7_9 python2-distro-1.5.0-1.el7 python2-pyrfc3339-1.1-3.el7 python2-rpm-macros-3-34.el7 python2-uritemplate-3.0.1-1.el7 rpm-4.11.3-48.el7_9 rpm-build-libs-4.11.3-48.el7_9 rpm-libs-4.11.3-48.el7_9 rpm-python-4.11.3-48.el7_9 rsync-3.1.2-12.el7_9 rsyslog-8.24.0-57.el7_9.3 screen-4.1.0-0.27.20120314git3c2946.el7_9 sed-4.2.2-7.el7 selinux-policy-3.13.1-268.el7_9.2 selinux-policy-targeted-3.13.1-268.el7_9.2 ssldump-1.8-1.el7 subversion-1.7.14-16.el7 subversion-libs-1.7.14-16.el7 sudo-1.8.23-10.el7_9.3 sysstat-10.1.5-20.el7_9 systemd-219-78.el7_9.9 systemd-libs-219-78.el7_9.9 systemd-sysv-219-78.el7_9.9 telnet-0.17-66.el7 tuned-2.11.0-12.el7_9 tzdata-2024a-1.el7 tzdata-java-2024a-1.el7 unzip-6.0-24.el7_9 util-linux-2.23.2-65.el7_9.1 vim-common-7.4.629-8.el7_9 vim-enhanced-7.4.629-8.el7_9 vim-filesystem-7.4.629-8.el7_9 vim-minimal-7.4.629-8.el7_9 virt-what-1.18-4.el7_9.1 webmin-2.201-1 xfsprogs-4.5.0-22.el7 xz-5.2.2-2.el7_9 xz-libs-5.2.2-2.el7_9 yum-3.4.3-168.el7.centos yum-cron-3.4.3-168.el7.centos yum-plugin-fastestmirror-1.1.31-54.el7_8 yum-utils-1.1.31-54.el7_8 zlib-1.2.7-21.el7_9 &> "${tmpDir}/update.log"

# log the post-state packages and versions
time nice rpm -qa &> "${tmpDir}/after.log"

# check to see what changes require a reboot, if any
time nice needs-restarting &> "${tmpDir}/needs-restarting.log"
time nice needs-restarting -r &> "${tmpDir}/needs-reboot.log"

# reboot the system to apply kernel changes
reboot

# after reboot, initiate a new backup
time sudo /bin/nice /root/backups/backup.sh &>> /var/log/backups/backup.log

Post-state Proof

The below command will output zero or nearly-zero packages after this CHG is successfully complete 

yum list updates

Validation Steps

  1. Access the following URLs; make sure redirects and the destination pages look sane
    1. http://wiki.opensourceecology.org/
    2. http://opensourceecology.org/
    3. http://openbuildinginstitute.org/
    4. http://store.opensourceecology.org/
    5. http://oswh.opensourceecology.org/
    6. http://fef.opensourceecology.org/
    7. http://microfactory.opensourceecology.org/
    8. http://forum.opensourceecology.org/
    9. http://phplist.opensourceecology.org/lists/
  1. Access and login to the following private sites too to make sure everything is sane
    1. https://awstats.opensourceecology.org:4443
    2. https://munin.opensourceecology.org:4443
  1. Login and attempt to make a trivial change on the following sites
    1. https://wiki.opensourceecology.org/
    2. https://opensourceecology.org/
  1. Test a backups run; make sure they're successful and uploaded to backblaze

Revert Steps

All the packages can be reverted to their previous versions using the following command 

yum update-to perl-Carp-1.26-244.el7.noarch fontconfig-2.13.0-4.3.el7.x86_64 nginx-filesystem-1.20.1-10.el7.noarch perl-Filter-1.49-3.el7.x86_64 perl-Switch-2.16-7.el7.noarch libnetfilter_cttimeout-1.0.0-7.el7.x86_64 ntfs-3g-libs-2022.10.3-1.el7.x86_64 perl-Business-ISBN-Data-20120719.001-2.el7.noarch dracut-033-568.el7.x86_64 gmp-6.0.0-15.el7.x86_64 perl-HTTP-Cookies-6.01-5.el7.noarch dbus-1.10.24-13.el7_6.x86_64 cacti-1.2.27-1.el7.noarch pkcs11-helper-1.11-3.el7.x86_64 device-mapper-event-libs-1.02.164-7.el7_8.1.x86_64 dracut-network-033-568.el7.x86_64 polkit-0.112-26.el7.x86_64 libglvnd-glx-1.0.1-0.8.git5baa1e5.el7.x86_64 avahi-libs-0.6.31-20.el7.x86_64 keyutils-libs-1.5.8-3.el7.x86_64 libxml2-2.9.1-6.el7.4.x86_64 perl-IO-Compress-2.061-2.el7.noarch libnetfilter_queue-1.0.2-2.el7_2.x86_64 fipscheck-1.4.1-6.el7.x86_64 bind-license-9.11.4-16.P2.el7_8.2.noarch php-symfony-config-2.8.12-2.el7.noarch munin-cgi-2.0.54-1.el7.noarch tzdata-java-2019c-1.el7.noarch php-symfony-var-dumper-2.8.12-2.el7.noarch libreport-filesystem-2.1.11-53.el7.centos.x86_64 bash-4.2.46-34.el7.x86_64 php-password-compat-1.0.4-1.el7.noarch tuned-2.11.0-8.el7.noarch audit-libs-2.8.5-4.el7.x86_64 nano-2.3.1-10.el7.x86_64 openssh-server-7.4p1-21.el7.x86_64 python-repoze-lru-0.4-3.el7.noarch elfutils-libelf-0.176-4.el7.x86_64 subversion-1.7.14-14.el7.x86_64 apr-1.4.8-5.el7.x86_64 biosdevname-0.7.3-2.el7.x86_64 pam-1.1.8-23.el7.x86_64 php56w-intl-5.6.40-1.w7.x86_64 libsemanage-2.5-14.el7.x86_64 rrdtool-perl-1.4.8-9.el7.x86_64 php56w-gd-5.6.40-1.w7.x86_64 libxcb-1.13-1.el7.x86_64 bacula-director-5.2.13-23.1.el7.x86_64 perl-Sys-Syslog-0.33-3.el7.x86_64 python-virtualenv-15.1.0-4.el7_7.noarch hunspell-1.3.2-15.el7.x86_64 pyliblzma-0.5.3-11.el7.x86_64 iputils-20160308-10.el7.x86_64 mesa-libglapi-18.3.4-7.el7.x86_64 perl-Email-Date-Format-1.002-15.el7.noarch kernel-devel-3.10.0-1127.el7.x86_64 logrotate-3.8.6-19.el7.x86_64 perl-Package-Stash-XS-0.26-3.el7.x86_64 python2-psutil-5.6.7-1.el7.x86_64 nss-sysinit-3.44.0-7.el7_7.x86_64 perl-Mail-Sender-0.8.23-1.el7.noarch libXfont-1.5.4-1.el7.x86_64 perl-Crypt-Rijndael-1.12-1.el7.x86_64 pciutils-libs-3.5.1-3.el7.x86_64 perl-Log-Dispatch-FileRotate-1.19-13.el7.noarch telnet-0.17-65.el7_8.x86_64 python-gobject-base-3.22.0-1.el7_4.1.x86_64 perl-Error-0.17020-2.el7.noarch groff-base-1.22.2-8.el7.x86_64 python-zope-component-4.1.0-5.el7.noarch nettle-2.7.1-8.el7.x86_64 snappy-1.1.0-3.el7.x86_64 python-requests-2.6.0-9.el7_8.noarch xz-libs-5.2.2-1.el7.x86_64 kernel-3.10.0-693.2.2.el7.x86_64 hicolor-icon-theme-0.12-7.el7.noarch libyaml-0.1.4-11.el7_0.x86_64 vim-minimal-7.4.629-6.el7.x86_64 perl-Data-Validate-IP-0.27-13.el7.noarch python-backports-1.0-8.el7.x86_64 rpm-4.11.3-43.el7.x86_64 xz-5.2.2-1.el7.x86_64 haveged-1.9.1-1.el7.x86_64 rpm-build-libs-4.11.3-43.el7.x86_64 python-ply-3.4-11.el7.noarch bind-libs-9.11.4-16.P2.el7_8.2.x86_64 php-composer-ca-bundle-1.3.1-1.el7.noarch btrfs-progs-4.9.1-1.el7.x86_64 make-3.82-24.el7.x86_64 openvpn-2.4.12-1.el7.x86_64 perl-constant-1.27-2.el7.noarch php56w-pear-1.10.4-1.w7.noarch perl-Time-HiRes-1.9725-3.el7.x86_64 perl-LWP-MediaTypes-6.02-2.el7.noarch rclone-1.55.1-1.el7.x86_64 perl-File-Path-2.09-2.el7.noarch htop-2.2.0-3.el7.x86_64 which-2.20-7.el7.x86_64 perl-Net-IP-1.26-4.el7.noarch nginx-mod-http-perl-1.20.1-10.el7.x86_64 perl-Pod-Simple-3.28-4.el7.noarch perl-File-Listing-6.04-7.el7.noarch nginx-all-modules-1.20.1-10.el7.noarch perl-Net-DNS-0.72-6.el7.x86_64 awstats-7.8-3.el7.noarch libestr-0.1.9-2.el7.x86_64 perl-WWW-RobotRules-6.02-5.el7.noarch composer-1.10.27-1.el7.noarch libgcrypt-1.5.3-14.el7.x86_64 cracklib-dicts-2.9.0-11.el7.x86_64 perl-HTML-Parser-3.71-4.el7.x86_64 python2-certbot-1.11.0-2.el7.noarch perl-Encode-Detect-1.01-13.el7.x86_64 libXrender-0.9.10-1.el7.x86_64 python-configobj-4.7.2-7.el7.noarch perl-Clipboard-0.29-1.el7.noarch centos-indexhtml-7-9.el7.centos.noarch libev-4.15-7.el7.x86_64 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python-idna-2.4-1.el7.noarch libaio-0.3.109-13.el7.x86_64 python-devel-2.7.5-88.el7.x86_64 python-zope-interface-4.0.5-4.el7.x86_64 dbus-python-1.1.1-9.el7.x86_64 libwayland-client-1.15.0-1.el7.x86_64 ncftp-3.2.5-7.el7.x86_64 libdb-utils-5.3.21-25.el7.x86_64 libuser-0.60-9.el7.x86_64 python-lxml-3.2.1-4.el7.x86_64 net-snmp-agent-libs-5.7.2-48.el7_8.x86_64 epel-release-7-14.noarch perl-parent-0.225-244.el7.noarch libstdc++-devel-4.8.5-39.el7.x86_64 libsodium13-1.0.5-1.el7.x86_64 ncurses-5.9-14.20130511.el7_4.x86_64 e2fsprogs-libs-1.42.9-17.el7.x86_64

See Also

  1. https://serverfault.com/questions/1014455/how-to-list-packages-needing-update-in-format-for-yum-update-to
  2. CHG-2020-05-04_yum_update Last yum update (in May 2020)
  3. List of other CHG "tickets"
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